Standard Vocabulary
Report Digitization
Image Annotation
Visualization Dashboard

Standard Vocabulary Tree

Download Vocabulary (.JSON) Download Vocabulary (.OBO)

Confirm Upload Vocabulary

This will replace the current vocabulary with your custom file. Please note that this will DELETE all terms annotation for each patient because you are totally repalce your previous vocabulary. You will have to re-annotate all patients from the database.This feature is experimental and might not work with all vocabularies in OWL and OBO formats. Espcially it has issue with big ones (>1000 classes). In case of error, the vocabulary will not be switched.

Confirm Ontology Lang Inversion

Vocabulary Properties

Vocabulary ID Vocabulary Name Alternative Language Synonyms Show as Image Annotation Class
Associated HPO Terms (Extracted from reports) Associated Genes (Extracted from reports) Associated Disease (Extracted from reports) Positively Correlates with (Extracted from reports ; >0.5) Description

Created by: Corentin Meyer, PhD. Code availiable here Contact: rf.reyem@tcatnoc